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23 December 2023
- 09:2209:22, 23 December 2023 diff hist +36 Private:Inhouse compile →Inhouse Compile current Tag: Visual edit
21 December 2023
- 11:5711:57, 21 December 2023 diff hist +35 Manual:DLSSystem →DLS Validation Tag: Visual edit
- 11:5511:55, 21 December 2023 diff hist +139 Manual:DLSSystem →DLS Validation Tag: Visual edit
- 11:5311:53, 21 December 2023 diff hist 0 Manual:DLSSystem →Perl in conda environment Tag: Visual edit
- 11:3811:38, 21 December 2023 diff hist +2,282 Setup nbconvert →References current Tag: Visual edit
- 10:1310:13, 21 December 2023 diff hist +1,054 N Setup nbconvert Created page with "== nbconvert == The '''nbconvert''' tool<ref>https://github.com/jupyter/nbconvert</ref> (jupyter nbconvert) converts notebooks to various other formats via Jinja templates. The nbconvert tool allows you to convert an .ipynb into * HTML * LaTeX * PDF * Reveal JS * Markdown (md) * ReStructured Text (rst) * executable script * etc == Setup nvconvert on Ubuntu == <syntaxhighlight lang="bash"> #Install pandoc sudo apt-get install pandoc # install nbconvert with webpdf su..." Tag: Visual edit
- 09:1609:16, 21 December 2023 diff hist +1,518 Manual:DLSSystem/Conda configuration →Perl in conda environment Tag: Visual edit
- 08:3408:34, 21 December 2023 diff hist +10 Manual:DLSSystem/Conda configuration →Reinstall TF, Torch and JAX Tag: Visual edit
20 December 2023
- 14:0214:02, 20 December 2023 diff hist +145 Manual:DLSSystem →Perl in conda environment Tag: Visual edit
- 13:5913:59, 20 December 2023 diff hist +397 Manual:DLSSystem/Conda configuration →References Tag: Visual edit
- 13:5813:58, 20 December 2023 diff hist +137 Manual:DLSSystem/Conda configuration →Loading env from the script (method 1) Tag: Visual edit
- 13:5413:54, 20 December 2023 diff hist +370 Manual:DLSSystem/Conda configuration →Reinstall TF, Torch and JAX Tag: Visual edit
- 13:5013:50, 20 December 2023 diff hist +86 Manual:DLSSystem/Conda configuration →Pass conda parameter into Jupyter (method 2) Tag: Visual edit
- 13:3913:39, 20 December 2023 diff hist +116 Manual:DLSSystem/Conda configuration →Loading env from the script (method 1) Tag: Visual edit
- 13:3813:38, 20 December 2023 diff hist +1,041 Manual:DLSSystem/Conda configuration →Pass conda parameter into Jupyter Tag: Visual edit
- 13:2713:27, 20 December 2023 diff hist +60 Manual:DLSSystem →Multiple R version Tag: Visual edit
- 13:2013:20, 20 December 2023 diff hist +38 Conda vs Mamba comparision No edit summary current Tag: Visual edit
- 13:1913:19, 20 December 2023 diff hist +796 Manual:DLSSystem/Conda configuration →DLS conda configuration Tag: Visual edit
- 12:3112:31, 20 December 2023 diff hist +536 Setup logwatch on Ubuntu →Setup logwatch Tag: Visual edit
- 12:2112:21, 20 December 2023 diff hist +588 Manual:DLSSystem →Multiple gcc/g++ version Tag: Visual edit
- 12:1312:13, 20 December 2023 diff hist +40 Manual:DLSSystem →Network Configuration Tag: Visual edit
- 11:5511:55, 20 December 2023 diff hist +448 Manual:UCM No edit summary Tag: Visual edit
- 11:5011:50, 20 December 2023 diff hist +28 Manual:UCM →Reference Tag: Visual edit
- 11:1711:17, 20 December 2023 diff hist +2,843 N Manual:DLSsystem/network example Created page with "== DLS Network bonding example == Pre-configured standalone DLS system shipped with link aggregation and the configuration file looks like following,<syntaxhighlight lang="bash"> $ cat /etc/netplan/01-netcfg.yaml # This file describes the network interfaces available on your system # For more information, see netplan(5). network: version: 2 renderer: networkd # example of DHCP # ethernets: # eno1: # dhcp4: yes # example of static # ethernets: #..." current Tag: Visual edit
- 11:0611:06, 20 December 2023 diff hist +143 Manual:DLSSystem/Conda configuration →Pass conda parameter into Jupyter Tag: Visual edit
- 10:4910:49, 20 December 2023 diff hist +984 N Manual:UCM/PAHEcontrol Created page with " == Control PA/HE on Master == PA and HE can be controlled from master node<syntaxhighlight lang="bash"> pahecontrol service is at /etc/systemd/system/pahecontrol.service which actually reference pahecontrol.py and config.json.schedule at /opt/hpcmate/cux $sudo systemctl disable pahecontrol.service $sudo systemctl enable pahecontrol.service $sudo systemctl start pahecontrol.service $sudo systemctl stop pahecontrol.service $sudo systemctl status pahecontrol.service </..." current Tag: Visual edit
- 10:2510:25, 20 December 2023 diff hist +112 Manual:DLSSystem/Conda configuration →Pass conda parameter into Jupyter Tag: Visual edit
- 10:1110:11, 20 December 2023 diff hist +406 Manual:DLSSystem/Conda configuration →Pass conda parameter into Jupyter Tag: Visual edit
- 10:0610:06, 20 December 2023 diff hist +1,745 Manual:DLSSystem/Conda configuration →HMDLS_PATH Tag: Visual edit
- 09:5909:59, 20 December 2023 diff hist 0 Manual:DLSSystem/Conda configuration →DLSBI conda environment Tag: Visual edit
- 09:4909:49, 20 December 2023 diff hist +11 Manual:DLSSystem →Conda environment Tag: Visual edit
- 09:3109:31, 20 December 2023 diff hist +360 Manual:DLSSystem/dlsmodules →Preset modules and libraries current Tag: Visual edit
- 08:2408:24, 20 December 2023 diff hist +1,339 Conda vs Mamba comparision No edit summary Tag: Visual edit
- 08:1608:16, 20 December 2023 diff hist +409 N Conda vs Mamba comparision Created page with "{| class="wikitable" |+ !Type !Mamba !Conda !Notes |- |clone env |Export the contents of the existing environment to a YAML file. <code>micromamba env export -n oldenv > oldenv.yaml</code> Create a new environment from the YAML file. <code>micromamba env create -n newenv -f oldenv.yaml</code> |conda create --name CLONE_ENV_NAME --clone ENV_NAME | |- | | | | |- | | | | |} == References == <references />" Tag: Visual edit
- 08:1208:12, 20 December 2023 diff hist +88 Manual:DLSSystem →Conda environment Tag: Visual edit
19 December 2023
- 18:0118:01, 19 December 2023 diff hist +31 Manual:DLSSystem →Environment module Tag: Visual edit
- 10:4810:48, 19 December 2023 diff hist +51 Privatre:bioinfomatics →References current Tag: Visual edit
- 10:2010:20, 19 December 2023 diff hist +270 Compile tips and tricks No edit summary current Tag: Visual edit
- 08:2608:26, 19 December 2023 diff hist +442 N Manual:DLSSystem/dlsmodules Created page with "== Preset modules and libraries == HPCMATE DLS has two type of systems - standalone and UCM cluster version Following table is a summary of preconfigured DLS modules {| class="wikitable" |+ !Module !Version !DLS !DLSBI !UCM clients !UCM master !Path |- |Polyphen |v2 | |O | | |/opt/hpcmate/tools/libs/pph2 |- |ncbi-blast |v2.15.0, v2.9.0 | |O | | |/opt/hpcmate/tools/libs/blast+-{version} |- | | | | | | | |} == References == <references />" Tag: Visual edit
- 08:1808:18, 19 December 2023 diff hist +110 Manual:DLSSystem/Conda configuration No edit summary Tag: Visual edit
- 07:4107:41, 19 December 2023 diff hist +1,000 N Manual:DLSSystem/Conda configuration Created page with " == HMDLS_PATH == $HMDLS_PATH activates when user ativate pre-setting dls or dlsbi environment and deactivate. $HMDLS_PATH variable will be added to default conda $PATH on bash environment and be removed on deactivation. <ref>https://stackoverflow.com/questions/63721599/conda-activate-d-and-deactivate-d-do-not-behave-what-i-expect</ref> <syntaxhighlight lang="bash"> # activate environment script is at $CONDA_PREFIX/etc/conda/activate.d/activate-hmdls.sh #!/bin/bash ex..." Tag: Visual edit
- 07:3207:32, 19 December 2023 diff hist +89 Manual:DLSSystem →Conda environment Tag: Visual edit
18 December 2023
17 December 2023
- 20:0120:01, 17 December 2023 diff hist +937 Privatre:bioinfomatics →Key online URLs Tag: Visual edit
- 17:3717:37, 17 December 2023 diff hist +20 Privatre:bioinfomatics →References Tag: Visual edit
- 17:0417:04, 17 December 2023 diff hist −7 Privatre:bioinfomatics →References Tag: Visual edit
- 15:5915:59, 17 December 2023 diff hist −58 HMG493-SB1 →Features[edit | edit source] Tag: Visual edit
- 15:1115:11, 17 December 2023 diff hist −483 HMG493-SB1 →Specifications[edit | edit source] Tag: Visual edit
- 15:0515:05, 17 December 2023 diff hist +116 HMG493-SB1 →Category Tag: Visual edit
- 15:0415:04, 17 December 2023 diff hist +3,937 N HMG493-SB1 Created page with "center|frameless|726x726px|HMG493-SB1 ==Application[edit | edit source]== *Artificial intelligence *Heavy scientific computation *High-performance computing *Research lab/national lab *Astrophysics, business intelligence ==Features[edit | edit source]== #2 Intel Gen 4<sup>th</sup> Sockets, 10-GPUs, 4U Accelerator Server for HPC and Storage # 4U formfactor, 10 double-width full-height GPUs over PCIe 5.0, Dual ROM Architecture # Dual processor, LGA..." Tag: Visual edit: Switched
