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23 December 2023
- 09:4309:43, 23 December 2023 diff hist +1,683 N Private:Inhouse compile/OpenSSL Created page with "== OpenSSL == OpenSSL<ref>https://github.com/openssl</ref> is a software library for applications that secure communications over computer networks against eavesdropping or need to identify the party at the other end. It is widely used by Internet servers, including the majority of HTTPS websites.<ref>https://endoflife.date/openssl</ref> This guide intends to teach you to '''Install the Latest version of OpenSSL on Ubuntu 20.04'''. OpenSSL is an open-source command line..." Tag: Visual edit
- 09:3409:34, 23 December 2023 diff hist +45 PatchELF →Change the dynamic loader ("ELF interpreter") of executables:[1] current Tag: Visual edit
- 09:3209:32, 23 December 2023 diff hist +1,876 N RPATH Created page with "'''rpath''' designates the run-time search path hard-coded in an executable file or library. Dynamic linking loaders use the rpath to find required libraries. <ref>https://en.wikipedia.org/wiki/Rpath</ref> When you are '''compiling''' a program, you create object files and then '''link''' them together. You may use GNU ld(1) to link them, there are also other linkers, LLVM linker. A linker combines object files into executable. After then when you '''execute''' an alre..." current Tag: Visual edit
- 09:2409:24, 23 December 2023 diff hist +8 PatchELF No edit summary Tag: Visual edit
- 09:2209:22, 23 December 2023 diff hist +36 Private:Inhouse compile →Inhouse Compile current Tag: Visual edit
21 December 2023
- 11:5711:57, 21 December 2023 diff hist +35 Manual:DLSSystem →DLS Validation Tag: Visual edit
- 11:5511:55, 21 December 2023 diff hist +139 Manual:DLSSystem →DLS Validation Tag: Visual edit
- 11:5311:53, 21 December 2023 diff hist 0 Manual:DLSSystem →Perl in conda environment Tag: Visual edit
- 11:3811:38, 21 December 2023 diff hist +2,282 Setup nbconvert →References current Tag: Visual edit
- 10:1310:13, 21 December 2023 diff hist +1,054 N Setup nbconvert Created page with "== nbconvert == The '''nbconvert''' tool<ref>https://github.com/jupyter/nbconvert</ref> (jupyter nbconvert) converts notebooks to various other formats via Jinja templates. The nbconvert tool allows you to convert an .ipynb into * HTML * LaTeX * PDF * Reveal JS * Markdown (md) * ReStructured Text (rst) * executable script * etc == Setup nvconvert on Ubuntu == <syntaxhighlight lang="bash"> #Install pandoc sudo apt-get install pandoc # install nbconvert with webpdf su..." Tag: Visual edit
- 09:1609:16, 21 December 2023 diff hist +1,518 Manual:DLSSystem/Conda configuration →Perl in conda environment Tag: Visual edit
- 08:3408:34, 21 December 2023 diff hist +10 Manual:DLSSystem/Conda configuration →Reinstall TF, Torch and JAX Tag: Visual edit
20 December 2023
- 14:0214:02, 20 December 2023 diff hist +145 Manual:DLSSystem →Perl in conda environment Tag: Visual edit
- 13:5913:59, 20 December 2023 diff hist +397 Manual:DLSSystem/Conda configuration →References Tag: Visual edit
- 13:5813:58, 20 December 2023 diff hist +137 Manual:DLSSystem/Conda configuration →Loading env from the script (method 1) Tag: Visual edit
- 13:5413:54, 20 December 2023 diff hist +370 Manual:DLSSystem/Conda configuration →Reinstall TF, Torch and JAX Tag: Visual edit
- 13:5013:50, 20 December 2023 diff hist +86 Manual:DLSSystem/Conda configuration →Pass conda parameter into Jupyter (method 2) Tag: Visual edit
- 13:3913:39, 20 December 2023 diff hist +116 Manual:DLSSystem/Conda configuration →Loading env from the script (method 1) Tag: Visual edit
- 13:3813:38, 20 December 2023 diff hist +1,041 Manual:DLSSystem/Conda configuration →Pass conda parameter into Jupyter Tag: Visual edit
- 13:2713:27, 20 December 2023 diff hist +60 Manual:DLSSystem →Multiple R version Tag: Visual edit
- 13:2013:20, 20 December 2023 diff hist +38 Conda vs Mamba comparision No edit summary current Tag: Visual edit
- 13:1913:19, 20 December 2023 diff hist +796 Manual:DLSSystem/Conda configuration →DLS conda configuration Tag: Visual edit
- 12:3112:31, 20 December 2023 diff hist +536 Setup logwatch on Ubuntu →Setup logwatch Tag: Visual edit
- 12:2112:21, 20 December 2023 diff hist +588 Manual:DLSSystem →Multiple gcc/g++ version Tag: Visual edit
- 12:1312:13, 20 December 2023 diff hist +40 Manual:DLSSystem →Network Configuration Tag: Visual edit
- 11:5511:55, 20 December 2023 diff hist +448 Manual:UCM No edit summary Tag: Visual edit
- 11:5011:50, 20 December 2023 diff hist +28 Manual:UCM →Reference Tag: Visual edit
- 11:1711:17, 20 December 2023 diff hist +2,843 N Manual:DLSsystem/network example Created page with "== DLS Network bonding example == Pre-configured standalone DLS system shipped with link aggregation and the configuration file looks like following,<syntaxhighlight lang="bash"> $ cat /etc/netplan/01-netcfg.yaml # This file describes the network interfaces available on your system # For more information, see netplan(5). network: version: 2 renderer: networkd # example of DHCP # ethernets: # eno1: # dhcp4: yes # example of static # ethernets: #..." current Tag: Visual edit
- 11:0611:06, 20 December 2023 diff hist +143 Manual:DLSSystem/Conda configuration →Pass conda parameter into Jupyter Tag: Visual edit
- 10:4910:49, 20 December 2023 diff hist +984 N Manual:UCM/PAHEcontrol Created page with " == Control PA/HE on Master == PA and HE can be controlled from master node<syntaxhighlight lang="bash"> pahecontrol service is at /etc/systemd/system/pahecontrol.service which actually reference pahecontrol.py and config.json.schedule at /opt/hpcmate/cux $sudo systemctl disable pahecontrol.service $sudo systemctl enable pahecontrol.service $sudo systemctl start pahecontrol.service $sudo systemctl stop pahecontrol.service $sudo systemctl status pahecontrol.service </..." current Tag: Visual edit
- 10:2510:25, 20 December 2023 diff hist +112 Manual:DLSSystem/Conda configuration →Pass conda parameter into Jupyter Tag: Visual edit
- 10:1110:11, 20 December 2023 diff hist +406 Manual:DLSSystem/Conda configuration →Pass conda parameter into Jupyter Tag: Visual edit
- 10:0610:06, 20 December 2023 diff hist +1,745 Manual:DLSSystem/Conda configuration →HMDLS_PATH Tag: Visual edit
- 09:5909:59, 20 December 2023 diff hist 0 Manual:DLSSystem/Conda configuration →DLSBI conda environment Tag: Visual edit
- 09:4909:49, 20 December 2023 diff hist +11 Manual:DLSSystem →Conda environment Tag: Visual edit
- 09:3109:31, 20 December 2023 diff hist +360 Manual:DLSSystem/dlsmodules →Preset modules and libraries current Tag: Visual edit
- 08:2408:24, 20 December 2023 diff hist +1,339 Conda vs Mamba comparision No edit summary Tag: Visual edit
- 08:1608:16, 20 December 2023 diff hist +409 N Conda vs Mamba comparision Created page with "{| class="wikitable" |+ !Type !Mamba !Conda !Notes |- |clone env |Export the contents of the existing environment to a YAML file. <code>micromamba env export -n oldenv > oldenv.yaml</code> Create a new environment from the YAML file. <code>micromamba env create -n newenv -f oldenv.yaml</code> |conda create --name CLONE_ENV_NAME --clone ENV_NAME | |- | | | | |- | | | | |} == References == <references />" Tag: Visual edit
- 08:1208:12, 20 December 2023 diff hist +88 Manual:DLSSystem →Conda environment Tag: Visual edit
19 December 2023
- 18:0118:01, 19 December 2023 diff hist +31 Manual:DLSSystem →Environment module Tag: Visual edit
- 10:4810:48, 19 December 2023 diff hist +51 Privatre:bioinfomatics →References current Tag: Visual edit
- 10:2010:20, 19 December 2023 diff hist +270 Compile tips and tricks No edit summary current Tag: Visual edit
- 08:2608:26, 19 December 2023 diff hist +442 N Manual:DLSSystem/dlsmodules Created page with "== Preset modules and libraries == HPCMATE DLS has two type of systems - standalone and UCM cluster version Following table is a summary of preconfigured DLS modules {| class="wikitable" |+ !Module !Version !DLS !DLSBI !UCM clients !UCM master !Path |- |Polyphen |v2 | |O | | |/opt/hpcmate/tools/libs/pph2 |- |ncbi-blast |v2.15.0, v2.9.0 | |O | | |/opt/hpcmate/tools/libs/blast+-{version} |- | | | | | | | |} == References == <references />" Tag: Visual edit
- 08:1808:18, 19 December 2023 diff hist +110 Manual:DLSSystem/Conda configuration No edit summary Tag: Visual edit
- 07:4107:41, 19 December 2023 diff hist +1,000 N Manual:DLSSystem/Conda configuration Created page with " == HMDLS_PATH == $HMDLS_PATH activates when user ativate pre-setting dls or dlsbi environment and deactivate. $HMDLS_PATH variable will be added to default conda $PATH on bash environment and be removed on deactivation. <ref>https://stackoverflow.com/questions/63721599/conda-activate-d-and-deactivate-d-do-not-behave-what-i-expect</ref> <syntaxhighlight lang="bash"> # activate environment script is at $CONDA_PREFIX/etc/conda/activate.d/activate-hmdls.sh #!/bin/bash ex..." Tag: Visual edit
- 07:3207:32, 19 December 2023 diff hist +89 Manual:DLSSystem →Conda environment Tag: Visual edit
18 December 2023
17 December 2023
- 20:0120:01, 17 December 2023 diff hist +937 Privatre:bioinfomatics →Key online URLs Tag: Visual edit
- 17:3717:37, 17 December 2023 diff hist +20 Privatre:bioinfomatics →References Tag: Visual edit
- 17:0417:04, 17 December 2023 diff hist −7 Privatre:bioinfomatics →References Tag: Visual edit